





from typing import Dict

import numpy as np
import torch

from . import residue_constants as rc
from .tensor_utils import tensor_tree_map, tree_map

def   a_   (			lowerCAmelCase_				:      Dict[str, torch.Tensor]     ):
   __lowerCAmelCase							     =     []
   __lowerCAmelCase							     =     []
   __lowerCAmelCase							     =     []

   for rt in rc.restypes:
      __lowerCAmelCase							     =     rc.restype_name_to_atomaa_names[rc.restype_atoa[rt]]
      restype_atomaa_to_atomaa_list.append([(rc.atom_order[name] if name else 0) for name in atom_names]     )
      __lowerCAmelCase							     =     {name: i for i, name in enumerate(lowerCAmelCase_     )}
      restype_atomaa_to_atomaa_list.append(
          [(atom_name_to_idxaa[name] if name in atom_name_to_idxaa else 0) for name in rc.atom_types]     )

      restype_atomaa_mask_list.append([(1.0 if name else 0.0) for name in atom_names]     )

   # Add dummy mapping for restype 'UNK'
   restype_atomaa_to_atomaa_list.append([0] * 14     )
   restype_atomaa_to_atomaa_list.append([0] * 37     )
   restype_atomaa_mask_list.append([0.0] * 14     )

   __lowerCAmelCase							     =     torch.tensor(
       lowerCAmelCase_,     dtype=torch.intaa,     device=protein['aatype'].device,     )
   __lowerCAmelCase							     =     torch.tensor(
       lowerCAmelCase_,     dtype=torch.intaa,     device=protein['aatype'].device,     )
   __lowerCAmelCase							     =     torch.tensor(
       lowerCAmelCase_,     dtype=torch.floataa,     device=protein['aatype'].device,     )
   __lowerCAmelCase							     =     protein['aatype'].to(torch.long     )

   # create the mapping for (residx, atom14) --> atom37, i.e. an array
   # with shape (num_res, 14) containing the atom37 indices for this protein
   __lowerCAmelCase							     =     restype_atomaa_to_atomaa[protein_aatype]
   __lowerCAmelCase							     =     restype_atomaa_mask[protein_aatype]

   __lowerCAmelCase							     =     residx_atomaa_mask
   __lowerCAmelCase							     =     residx_atomaa_to_atomaa.long()

   # create the gather indices for mapping back
   __lowerCAmelCase							     =     restype_atomaa_to_atomaa[protein_aatype]
   __lowerCAmelCase							     =     residx_atomaa_to_atomaa.long()

   # create the corresponding mask
   __lowerCAmelCase							     =     torch.zeros([21, 37],     dtype=torch.floataa,     device=protein['aatype'].device     )
   for restype, restype_letter in enumerate(rc.restypes     ):
      __lowerCAmelCase							     =     rc.restype_atoa[restype_letter]
      __lowerCAmelCase							     =     rc.residue_atoms[restype_name]
      for atom_name in atom_names:
         __lowerCAmelCase							     =     rc.atom_order[atom_name]
         __lowerCAmelCase							     =     1

   __lowerCAmelCase							     =     restype_atomaa_mask[protein_aatype]
   __lowerCAmelCase							     =     residx_atomaa_mask

   return protein




def   a_   (			lowerCAmelCase_				:      Dict[str, torch.Tensor]     ):
   __lowerCAmelCase							     =     tree_map(lambda lowerCAmelCase_     : torch.tensor(lowerCAmelCase_,     device=batch['aatype'].device     ),     lowerCAmelCase_,     np.ndarray     )
   __lowerCAmelCase							     =     tensor_tree_map(lambda lowerCAmelCase_     : np.array(lowerCAmelCase_     ),     make_atomaa_masks(lowerCAmelCase_     )     )
   return out








import builtins
import sys

from ...utils.imports import _is_package_available
from . import cursor, input
from .helpers import Direction, clear_line, forceWrite, linebreak, move_cursor, reset_cursor, writeColor
from .keymap import KEYMAP


_snake_case  :   Union[str, Any]						   =  False
try:
     _snake_case  :   Tuple						   =  _is_package_available('google.colab')
except ModuleNotFoundError:
     pass



@input.register
class     _UpperCAmelCase   :

  """simple docstring"""


  def __init__(    self			:		Union[str, Any] ,  lowerCAmelCase_			:		str = None ,  lowerCAmelCase_			:		list = []					)							->						Optional[int]:
     __lowerCAmelCase							     =     0
     __lowerCAmelCase							     =     choices
     __lowerCAmelCase							     =     prompt
     if sys.platform == "win32":
        __lowerCAmelCase							     =     '*'
     else:
        __lowerCAmelCase							     =     '➔ '






  def     lowercase		(    self			:		Dict ,  lowerCAmelCase_			:		Dict ,  lowerCAmelCase_			:		str = ""					)							->						Any:
     if sys.platform != "win32":
        writeColor(self.choices[index] ,  3_2 ,  lowerCAmelCase_					)
     else:
        forceWrite(self.choices[index] ,  lowerCAmelCase_					)






  def     lowercase		(    self			:		List[Any] ,  lowerCAmelCase_			:		int					)							->						List[Any]:
     if index == self.position:
        forceWrite(f""" {self.arrow_char} """					)
        self.write_choice(lowerCAmelCase_					)
     else:
        forceWrite(f"""    {self.choices[index]}"""					)
     reset_cursor()






  def     lowercase		(    self			:		Dict ,  lowerCAmelCase_			:		Direction ,  lowerCAmelCase_			:		int = 1					)							->						Union[str, Any]:
     __lowerCAmelCase							     =     self.position
     if direction == Direction.DOWN:
        if self.position + 1 >= len(self.choices					):
           return
        self.position += num_spaces
     else:
        if self.position - 1 < 0:
           return
        self.position -= num_spaces
     clear_line()
     self.print_choice(lowerCAmelCase_					)
     move_cursor(lowerCAmelCase_ ,  direction.name					)
     self.print_choice(self.position					)






  @input.mark(KEYMAP['up']					)
  def     lowercase		(    self			:		Optional[int]					)							->						Tuple:
     self.move_direction(Direction.UP					)






  @input.mark(KEYMAP['down']					)
  def     lowercase		(    self			:		str					)							->						Optional[Any]:
     self.move_direction(Direction.DOWN					)






  @input.mark(KEYMAP['newline']					)
  def     lowercase		(    self			:		str					)							->						Any:
     move_cursor(len(self.choices					) - self.position ,  'DOWN'					)
     return self.position






  @input.mark(KEYMAP['interrupt']					)
  def     lowercase		(    self			:		Dict					)							->						Optional[Any]:
     move_cursor(len(self.choices					) - self.position ,  'DOWN'					)
     raise KeyboardInterrupt






  @input.mark_multiple(*[KEYMAP[str(lowerCAmelCase_					)] for number in range(1_0					)]					)
  def     lowercase		(    self			:		List[Any]					)							->						Optional[int]:
     __lowerCAmelCase							     =     int(chr(self.current_selection					)					)
     __lowerCAmelCase							     =     index - self.position
     if index == self.position:
        return
     if index < len(self.choices					):
        if self.position > index:
           self.move_direction(Direction.UP ,  -movement					)
        elif self.position < index:
           self.move_direction(Direction.DOWN ,  lowerCAmelCase_					)
        else:
           return
     else:
        return






  def     lowercase		(    self			:		Any ,  lowerCAmelCase_			:		int = 0					)							->						int:
     if self.prompt:
        linebreak()
        forceWrite(self.prompt ,  '\n'					)
        if in_colab:
           forceWrite('Please input a choice index (starting from 0), and press enter' ,  '\n'					)
        else:
           forceWrite('Please select a choice using the arrow or number keys, and selecting with enter' ,  '\n'					)
     __lowerCAmelCase							     =     default_choice
     for i in range(len(self.choices					)					):
        self.print_choice(lowerCAmelCase_					)
        forceWrite('\n'					)
     move_cursor(len(self.choices					) - self.position ,  'UP'					)
     with cursor.hide():
        while True:
           if in_colab:
              try:
                 __lowerCAmelCase							     =     int(builtins.input()					)
              except ValueError:
                 __lowerCAmelCase							     =     default_choice
           else:
              __lowerCAmelCase							     =     self.handle_input()
           if choice is not None:
              reset_cursor()
              for _ in range(len(self.choices					) + 1					):
                 move_cursor(1 ,  'UP'					)
                 clear_line()
              self.write_choice(lowerCAmelCase_ ,  '\n'					)
              return choice

